Why are planets not crushed by gravity? by aquarium (Curate) on Aug 05, 2010 at 01:57UTC Is that why there was that "low level" radioactive material leak in a Canadian reactor? ;) Seriously..don't you end up with two Use notepad and save as text, not RTF or some other format. If you're lucky though, Perl will catch it quickly and tell you where it starts � miss off the closing " in line 7 of the above example, and Perl will have a peek at these guys
Running Bl2Seq In Standaloneblastplus Getting BlastResult from bl2seq is throwing following message: Use of uninitialized value in num... What struck me as very odd was that the same program run in terminal on my virtualized Linux Mint 14 OS, using Perl 5.14, produced the following error: "use" not allowed See update. –ikegami Jan 15 '13 at 5:08 Thank you for your help! –84adam Jan 15 '13 at 7:00 add a comment| Your Answer draft saved draft discarded How do I use this? | Other CB clients Other Users?
Missing Comma If you forget a comma where there should be one, you'll almost always get the 'Scalar found where operator expected' message. Digital Alarm Clock What does the image on the back of the LotR discs represent? What I cannot be sure of is if I need the use statements in Perl programs from version 5.14 and up or if it is just fine to write the -w
Unfortunately, no interpreter is going to know what to do with this code. The Word doc would serve as the final spec and documentation, but it would also be parsed and compiled so that we could run our test suite against it (in order Thanks for you help, Duane. Just remember to pull out 3 in the morning 3.
I'm speaking from personal experience on this one. :D If that's what you did, you'll need to run the dos2unix utility to convert the file to the *nix formatting.[reply] Re: Unsure It is not a valid she-bang line, it is read as negation ! This is the cause of the problem here. Check This Out How To Run Local Blast Program In Apache2 Server...
Also, you don't need to use sed from within Perl, just use the substitution operator. Etc FAIR USE NOTICE This site contains copyrighted material the use of which has not always been specifically authorized by the copyright owner. I feel so much better knowing that I just made a simple mistake! –84adam Jan 15 '13 at 7:01 add a comment| up vote 8 down vote You did something like script2.pl !#/usr/bin/perl use strict; use warnings ; print "Hello world.\n" ; Calling perl script2.pl gives "use" not allowed in expression at script2.pl line 3, at end of line syntax error at
I want to be able to retrieve all refseq fasta sequences for a list of organisms. You will save yourself a lot of time if you work with the tab-delimited blast because you can easily manipulate it at the command-line or in Excel. Login or register Username or Email Address Are you already registered? I could verify it. –dgw Jan 14 '13 at 8:58 2 Your script1.pl doesn't ignore the wrong shebang line, because obviously when you write !# it isn't a shebang line.
If you have received this message in error please inform us immediately and delete all copies of it from your system. More about the author Could you please help me out. I need to output as a tabular format. It's the ! (not) operator, followed by a comment.
So if you use correct she-bang lines, all three scripts will work as designed. Using the correct syntax script3.pl #!/usr/bin/perl use strict ; use warnings ; print "Hello world.\n" ; Calling perl script3.pl gives Hello world. Running A Standalone Batch Blast With Fasta File Using Perl, Can'T Get Results For All Sequences. check my blog Join them; it only takes a minute: Sign up Why is “use” not allowed, as in “use strict;” in Perl 5.14?
I have created a database locally... I wrote ... perl use strict;) As mentioned elsewhere, the code you posted and the code you used is different.
Check out past polls. A runaway string will cause a cascade of errors as code looks like strings and strings look like code all the way through your program. I've seen this cause Perl to think the code starts halfway through the shebang line (e.g. www.softpanorama.org was created as a service to the UN Sustainable Development Networking Programme (SDNP) in the author free time.
Previous company name is ISIS, how to list on CV? To emailaddress: To name: From name: Extra information in the email body (optional): Email: I am sending you the codedump of Why is "use" not allowed, as in "use strict;" in Socks just get in the wayResults (302 votes). http://back2cloud.com/perl-error/perl-error-checking.php You can use PayPal to make a contribution, supporting development of this site and speed up access.
Why can't I set NODE_ENV to undefined? The parsing will continue and with script1.pl perl will execute ! Why don't browser DNS caches mitigate DDOS attacks on DNS providers? by Your Mother (Chancellor) on Aug 04, 2010 at 22:22UTC You got a good answer from roboticus but there is more to think about.
Help With Bioperl Remote Blast Script (Bio::Tools::Run::Remoteblast) Hi, I would like to run a blast search for a fasta file containing many (100+) seqences. If you are not an addressee, you must not disclose, copy, circulate or in any other way use or rely on the information contained in this message or any attachment. This is a Spartan WHYFF (We Help You For Free) site written by people for whom English is not a native language. Die Kompilation von nagios-plugins setzt die zeile falsch: use lib "/opt/nagios-plugins/libexec" /libexec anstelle use lib "/opt/nagios-plugins/libexec /libexec"; Quote Report Content Go to Page Top Share Facebook 0 Twitter 0 Google Plus
AIX5L Beginner Posts 2 Number of hosts 200 Number of services 2000 Operating Systems AIX 1 "use" not allowed in expression at: alle nagios-plugins 1.4.3 perl scripts May 19th 2006, 10:27am